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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatttcaagctagaatatgattgtgctgtcattttaatttagataatttcctcaaattctatctcaagacttattggcttgcgcttggcaaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAA

Basic information

species Glycine max
transcript GLYMA13G25690.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4260349|gb|AI416845.1|AI416845
EST:     GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG                         GAGGCGGCATCCAATTTCTTGAAGATTTAATAGATAAGGGAGCTCATTGGA
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
EST: gi|4260402|gb|AI416898.1|AI416898
EST:     GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG                         GAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
EST: gi|120531028|gb|EH259161.1|EH259161
EST:     GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG                         GAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcctcaaattctatctcaagacttattggcttgcgcttggcaaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAA
         aaattctat  TA-rich tract