1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatggattgtactttttaatgtgcataagctatgcttaaaaactgtaagaaatctaatcatcttcatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC
species | Glycine max |
transcript | GLYMA13G25460.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCEST: gi|209729488|gb|BW651841.1|BW651841
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTGgtaaatggat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCEST: gi|192299791|gb|FG990057.1|FG990057
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTGgtaaatggat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTGgtaaatggat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
agctatgcttaaaaactgtaagaaatctaatcatcttcatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC
atctaat putative branch site (score: 3)
tcatcttcatttcttc CT-rich tract
ttaaaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatggattgtactttttaatgtgcataagctatgcttaaaaactgtaagaaatctaatcatcttcatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC