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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactgtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAG

Basic information

species Glycine max
transcript GLYMA13G24090.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24090.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0017g01080.t01 (Vitis vinifera), 3'ss of exon 2
---gtaaggactgtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAG------------
   |||  || | | |    | ||||| | | || || | |||   | |  | |||| | ||||||  || |  |  ||||  |   |||||||||||||||| |||||| |||||||||||| |||||||| | ||||||||| |||||||  ||            
gtggtatagattctgttggttttttatttctccttatttggttcattctatatttttctgttcaactaaagccctggtttc--cacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5752670|gb|AI959957.1|AI959957
EST:     ATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTG                         AGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
genomic: ATATTGACAGGTTGATATCATGCCTTCATATGGCACTTCCATTTGTAGTGgtaaggactg ... ctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAG
                                   tcatttttttctcctt  CT-rich tract
                               agaatcattttttt  TA-rich tract