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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacacacggtttattcaaagtttctttgaccagatgtgtttcattcctagagtttgtaaatgaactcgaatgattgtttattaatgtgttgattttttgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCGGCTTAATTACTTATTATGTTTTTTTAGGAGCGCATTAAAAATATGGCAA

Basic information

species Glycine max
transcript GLYMA13G20930.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20930.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os09g36450.1 (Oryza sativa), 3'ss of exon 8
-----gtacacacacggtttattcaaagtttctttgaccagatgtgtttcattcctagagtt-tgtaaatgaactcgaatgattgtttatt--aatgtgttg----attttttgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCGGCTTAATTACTTATTATGTTTTTTTAGGAGCGCATTAA--AAATATGGCAA---
      || |   ||    ||| |  |  | |        ||| ||     ||| || |    || |   |   | |  | ||||| ||||  | |   ||     |  ||  | | | |||||||| || ||||| || |||||||| || || ||||||||||||||||| || | ||      | |   || | ||| |    || |   | |    || |   
gtatgataaattaacatcatatcctgaaatacagcctgttgat-tgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCAGCCTGAT-----GTAACCCTTCTGTAGAAATAAATGACCCAGAGGCAGCGAGAC

upper sequence: GLYMA13G20930.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 3'ss of exon 7
gtacacacacggtttattcaaagtttctttgaccagatgtgtttcattcctagagtttgtaaatgaactcgaatgattgtttattaatgtgttgattttttgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCGGCTTAATTACTTATTATGTTTTTTTAGGAGCGC-ATTAAAAATATGGCAA
||| |   |  |||||  |       ||||    | ||||  || ||   ||||    |||||  | |||  |      ||||||       ||| | |         |||||||||||||||| |||||| | || |||||||| || ||||||||||| |||| |||    | |||   |       | ||| | |    ||    || 
gtaaaagtaaagtttagac-------ctttatggatatgttgttgatgaatagaa---gtaaagcagctcacactcacctttattg------tgactct---------agGGTCCTGAGTTTGCAACCATTGTGAACTCAGTCACGTCGAAGAAAGTTGCTGCTTGATTGAGAACTATCAGTAACGGAAATCGCTAGTCTCCATGGAACA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208286741|gb|GE085315.1|GE085315
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|208199925|gb|GD998612.1|GD998612
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|193565354|gb|FK522821.1|FK522821
EST:     AAAGCAAGAAGATATTGATGGATTTCTTGGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACC
genomic: AAAGCAAGAAGATATTGATGGATTTCTTG-TTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACC
EST: gi|208158835|gb|GD958252.1|GD958252
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|193716815|gb|FK654653.1|FK654653
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATT
EST: gi|207752026|gb|GD722143.1|GD722143
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|208133444|gb|GD929123.1|GD929123
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAA
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAA
EST: gi|208220559|gb|GE017135.1|GE017135
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATC
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATC
EST: gi|193532323|gb|FK491989.1|FK491989
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTAC
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTAC
EST: gi|193404769|gb|FK368282.1|FK368282
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAG
EST: gi|207841384|gb|GD811420.1|GD811420
EST:     AAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCAATTAAAG                         GGTCCTGAGTTTGCTACCATTATC
genomic: AAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCA-TTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATC
EST: gi|151399754|gb|EV269625.1|EV269625
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|207816408|gb|GD786241.1|GD786241
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTGGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|208215434|gb|GE012463.1|GE012463
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATT
EST: gi|193632944|gb|FK580092.1|FK580092
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTT
EST: gi|193679131|gb|FK620625.1|FK620625
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|193703433|gb|FK636505.1|FK636505
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTATC
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATC
EST: gi|208240804|gb|GE036834.1|GE036834
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGTTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCG
EST: gi|193730132|gb|FK663090.1|FK663090
EST:     CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCTGAGTTTGCTACCATTAT
genomic: CAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacac ... tgctgtacagGGTCCTGAGTTTGCTACCATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtaaatgaactcgaatgattgtttattaatgtgttgattttttgctgtacagGGTCCTGAGTTTGCTACCATTATCAATTCAGTCACTTCCAAGAAAGTTGCGGCTTAATTACTTATTATGTTTTTTTAGGAGCGCATTAAAAATATGGCAA
                                        ttttttgct  CT-rich tract
                        tttattaatgtgttga  TA-rich tract