1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
species | Glycine max |
transcript | GLYMA13G19500.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|151412335|gb|EV282147.1|EV282147
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|208303442|gb|GE101246.1|GE101246
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGEST: gi|214009280|gb|DB988589.1|DB988589
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|11413818|gb|BF425829.1|BF425829
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGEST: gi|192308688|gb|FK000078.1|FK000078
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|192330022|gb|FK020838.1|FK020838
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|21888361|gb|BQ741574.1|BQ741574
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|31472047|gb|CD414075.1|CD414075
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|41146349|gb|CK606560.1|CK606560
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|120494697|gb|EH222864.1|EH222864
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|11413799|gb|BF425810.1|BF425810
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|14259127|gb|BG882035.1|BG882035
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|193677791|gb|FK616613.1|FK616613
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|192308689|gb|FK000079.1|FK000079
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|151410176|gb|EV279991.1|EV279991
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTCCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|192309831|gb|FK002943.1|FK002943
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGEST: gi|151411553|gb|EV281364.1|EV281364
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|209719746|gb|BW672121.1|BW672121
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|192300349|gb|FG987866.1|FG987866
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGA-CTTGAG-CGGTAGTGTTGATTEST: gi|8283635|gb|BE021194.1|BE021194
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGEST: gi|120494567|gb|EH222734.1|EH222734
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|193687397|gb|FK629168.1|FK629168
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|21995044|gb|BQ786572.1|BQ786572
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|193483778|gb|FK451887.1|FK451887
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|31312299|gb|CD397502.1|CD397502
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|151396440|gb|EV266317.1|EV266317
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGEST: gi|8283558|gb|BE021117.1|BE021117
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGEST: gi|9204997|gb|BE331221.1|BE331221
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGG
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|58019190|gb|CX705932.1|CX705932
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|58023065|gb|CX709806.1|CX709806
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|193694539|gb|FK628591.1|FK628591
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCCGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTEST: gi|193687651|gb|FK628246.1|FK628246
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACT
EST: AACGACTTTCTTCCCGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GAACCTTATATGCGGAATACGTTGTGGAGAACTEST: gi|192309832|gb|FK002944.1|FK002944
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGA-CCTTATATGCGGAATACGTTGTGGAGAACT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|209701983|gb|BW664583.1|BW664583
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|8401707|gb|BE057341.1|BE057341
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCAGAATACATTGTGGAGAACTTGAGGCGGTAGTGTTAATTEST: gi|151394138|gb|EV264009.1|EV264009
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
attcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
cctttttattttgtt CT-rich tract
atatgaagtttaaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA