1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttggtttcttaatctttgaaaagtatatagctctgaacaacacttgctgtgtctacttttcattccttttttcatcaaatcttattagcttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG
species | Glycine max |
transcript | GLYMA13G19450.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGG GGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGEST: gi|16281999|gb|BI944782.1|BI944782
genomic: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGgtaattcctg ... ttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAG
EST: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGG GGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGEST: gi|192294186|gb|FG986275.1|FG986275
genomic: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGgtaattcctg ... ttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAG
EST: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGG GGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAG
genomic: TTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGgtaattcctg ... ttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAG
tgctgtgtctacttttcattccttttttcatcaaatcttattagcttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG
ttttttcatcaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtttcttaatctttgaaaagtatatagctctgaacaacacttgctgtgtctacttttcattccttttttcatcaaatcttattagcttgcattcagGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - gaaaagta
- - - - - - - - - - - - - - - -ctctgaa
- - - - - - - - - - - - - - - - - - - caacact