Sequence
atgc intronic sequence ATGC exonic sequencegtatgtataaatctattaggcaattactatgaacttcaatctttttttttctttttttaccaaagtgaattgtgttgttactggttctgacttctttcagctttgaaattcattttttttatctgacaaatgcaattattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
Basic information
species | Glycine max |
transcript | GLYMA13G18950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G18950.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os02g57180.1 (Oryza sativa), 3'ss of exon 8
gtatgtataaatctattaggcaattactatgaacttcaatctttttttttctttttttaccaaagtgaattgtgttgttactggttctgacttctttcagctttgaaattcattttttttatctga---caaa--tgcaattattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
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------------------------------------------------gccgttacggcttataatcagtcgtag-gcaaccgatggggacctacataaacttccacagcaggtgagataacatgaatgcaaccttttggtttttgcagGATTCAGCCTGTTTATGTTGTGGATGTTGCTGCTGCTATTGTCAACTCCCTCAAGGATGACGGCACCAGCATGGGAAAGACCTACGAACTTGGTGGACCA
upper sequence: GLYMA13G18950.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G143651_T01 (Zea mays), 3'ss of exon 8
gtatgtataaatctattaggcaattactatgaacttcaatctttttttttctttttttaccaaagtgaatt-gtgttgttactggttctgacttctttcagctttgaaattcattttttttatctgacaaatgcaat------tattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
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-------------------gtaagt--tttgcctgttgactctcctgatgcctgacctg--aaaatgagttcagggcatgaaatgacctccttttgttcatgttagaagttctttgccagcagttaaattacgtaatgttcccttttgcagGATTCAGCCTGTGTATGTAATCGATGTTGCTGCTGCTATTGTGAACTCCCTGAAGGATGACGGCACTAGCATGGGAAAGATATATGAACTTGGGGGCCCT
upper sequence: GLYMA13G18950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0005g04440.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtataaatctattaggcaattac-tatgaacttcaatctttttttttctttttttaccaaagtgaattgtgttgttactggttctgacttctttcagctttgaaattcattttttttat-ctgacaaatgcaattattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
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gtaagtctaaatctattaattgctaatatggaaactacaattctttattgggacattttaaccactttagtta--ttacttcttgcactgatatagaaatcttttctaatcattcgtgaatatgcttaccacgacacctttt-cagATTCCAACCTGTATACGTTATTGACGTTGCTGCTGCAATTATGGCCGCCTTGAAAGATGATGGTACAAGCATGGGAAAAGTTTATGAACTTGGTGGGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403355|gb|EV273165.1|EV273165EST: TTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAA GATCCAACCTGTTTATGTTATTGATGT-GCTGCTGCACTCACTTC
genomic: TTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAgtatgtataa ... attattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTC
EST:
gi|151397287|gb|EV267160.1|EV267160EST: TTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAA GATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTT
genomic: TTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAgtatgtataa ... attattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttctttcagctttgaaattcattttttttatctgacaaatgcaattattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
tttgaaattcattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtataaatctattaggcaattactatgaacttcaatctttttttttctttttttaccaaagtgaattgtgttgttactggttctgacttctttcagctttgaaattcattttttttatctgacaaatgcaattattgcagGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG