Sequence
atgc intronic sequence ATGC exonic sequencegtgttgtatggtgtgtcattttctaaattcttagatttgttatattatttatttgggtgtggattttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
Basic information
species | Glycine max |
transcript | GLYMA13G18670.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------gtgttgtatggtgtgtcattttctaa---attcttagatttgttatattatttatttgggtgtggattttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
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gttgttgtgtgttctttaatatagtgttttacattccttaaagcaattttttgcttccttgtccaaggaaatattagatatgctaatgaatttcgttaatagt--attttgcatgtatat---gtttggttttagGAGCACTCCTGGTTTAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTG
upper sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
gtgttgtatggtgtgtcattttctaaattcttagatttgttatattatttatttgggtgtggatt---ttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
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gtattgtatggtgtgtcctagtctaaattattggatttcat-taaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335217|gb|CO979083.1|CO979083EST: TGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAG GCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAA
genomic: TGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGgtgttgtatg ... tcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttatattatttatttgggtgtggattttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
cattcctct CT-rich tract
tattatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttgtatggtgtgtcattttctaaattcttagatttgttatattatttatttgggtgtggattttacctttgtgctgcattcctctatagGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC