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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattcattttcattgcttccatgcattatttactttccttcaaacctgtgtcatggaactaaattgtctttccctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTGGTGAAG

Basic information

species Glycine max
transcript GLYMA13G18030.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18030.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g00750.t01 (Vitis vinifera), 3'ss of exon 8
gttgattcattttcattgcttccatgcattatttactttccttcaaacctgtgtcatggaactaaattgtctttccctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTGGTGAAG
     |  |||||   || ||||||||   |||||| |||| |  |      ||  |  |||||||    |     |  ||  ||||| ||||| || || ||||| |||||||| || || |||||||| ||||||||||| ||||||||  | ||||||
--gtgtgtattttttctgattccatgctcaatttacattccatttatttctcgtt-tataactaaac---cccaaacattttccagGTGGCTACGGATAAATGCATAATGCTTTTCCTATTTCTTATTGTGTGTGGTGTAATAGCCATTATCATTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403478|gb|EV273288.1|EV273288
EST:     AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTGGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTGGTAGACAGgttgattcat ... ctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
EST: gi|298187854|gb|HO031811.1|HO031811
EST:     AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTGGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTGGTAGACAGgttgattcat ... ctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
EST: gi|298194389|gb|HO041037.1|HO041037
EST:     AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTAGTAGACAG                         GTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT
genomic: AGTTCTCAATTAAGAAGGCTTCCCAACTTGTTAAGGAGATTGGTAGACAGgttgattcat ... ctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactttccttcaaacctgtgtcatggaactaaattgtctttccctgttatcagGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTGGTGAAG
                            aactaaa  putative branch site (score: 2)
                                   ttgtctttccctgtt  CT-rich tract
                            aactaaatt  TA-rich tract