Sequence
atgc intronic sequence ATGC exonic sequencegtaaacacattcacgttgttgtttttggccactgtgaagcaatagtgttgtgcttcattcacaatgaatgacatatgaaatttatgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
Basic information
species | Glycine max |
transcript | GLYMA13G17950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g14810.1 (Oryza sativa), 3'ss of exon 8
gtaaacacattcacgttgttgttt-ttggccactgtgaagcaata-gtgttgtgcttcattcacaatgaatgacatatgaaattta--tgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
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gtaa-tgtctggttgtcattactcattagatatgacaatactctatatgatcaatattggtc-taaaaaattctttagctggttgaaatgtagAGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTGCCTTTAGCTCTTCTGGATCAAAAGGAG
upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaaacacattcacgttgttgtttttggccactgtgaagcaatagtgttgtgcttcattcacaatgaatgacatatgaaatttatgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
|| | | || | | | | || || | ||| || | | | | ||||| | | | | ||||||||||||| ||||| ||||| ||||||||||| ||||| || |||||| ||||||| || ||||| ||||| ||||||
gttgatagtttgtccattccataatcattttct--taaatatcagttttctccg--gtccctcttgaataatagtta----ctttgcagAGTGAGATAATGTCCAAGCCGGAACTATTTGTCGAGCCAGACCCAGAACTACCTTTAGCTCTTTTAGATCAAAAGGAG
upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 8
gtaaacacattcacgttgttgtttttggccactgtgaagcaatagtgttgtgcttcattcacaatgaatgacatatgaaatttatgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
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gtaaatattgccattgagtaatttt---cttttctaatgtta-aatgttgtggttcacaagaatcaactgattgatggcatccatacagCATGAGATAATGTCCAAGCCTGAATTGTTTGTTGAGCCTGATCCGGAGATGCCTTTGGCACTCTTGGATCAAAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagcaatagtgttgtgcttcattcacaatgaatgacatatgaaatttatgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
acatatgaaatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacacattcacgttgttgtttttggccactgtgaagcaatagtgttgtgcttcattcacaatgaatgacatatgaaatttatgcagAGTGAGATCATGTCTAAGCCTGAACTATTTGTGGAGCCTGATCCAGAATTACCTTTGGCACTTTTGGATCAGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG