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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattactttttggttaatttttgtttattgttaattgcatttgatgcatcatttgtatctaatttttttaatcttttaatgtttcccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGA

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 8
---aaattactttttg----gttaatttttgtttattgttaattgcatttgatgcatcatttgtatctaatttttttaatcttttaatgtttcccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGA
   | | | |||        |  |||  |  |||  | ||||||||| |   |||||       | |||   ||  | |||| |     ||| |      | | ||||||  ||||||||||| |||||||||||||||||||||||||| ||||| ||  | |  |  || || ||||  | ||| ||| | |||| ||| |||||
catagaatgcttcaaaagatgcaaatagtattttcctcttaattgcaatc--tgcatgtgggaaaactatgcttgcttatctgtcctgatttgca-----attacagGAAGGTGGCTTGGAAGCAGACAGATTCGTTGTAATTGGGCAACAAAAGGTGCTGGAGGTAACGAGGACAAGCCAAATTCAGATGCCAAAAGTGTTGTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562965|gb|BG551185.1|BG551185
EST:     CCAAAGTGCTATAAATGATTTGACTG                         GAAAA-GGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193400330|gb|FK367929.1|FK367929
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193440423|gb|FK407172.1|FK407172
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGA
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGA
EST: gi|208226527|gb|GE028192.1|GE028192
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193618203|gb|FK570745.1|FK570745
EST:     ATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: ATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193402169|gb|FK370216.1|FK370216
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208294750|gb|GE093869.1|GE093869
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208140082|gb|GD936902.1|GD936902
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|208196836|gb|GD995831.1|GD995831
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|207826074|gb|GD799815.1|GD799815
EST:     GTATTGCCCTAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: G-A-TGCCC-AAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193625489|gb|FK577477.1|FK577477
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193377660|gb|FK341436.1|FK341436
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|151407111|gb|EV276926.1|EV276926
EST:     CCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: CCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
EST: gi|193365227|gb|FK331468.1|FK331468
EST:     TGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGGCAACCAAAGGG
genomic: TGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATT-GGGCAACCAAAGGG
EST: gi|42723064|gb|CK768963.1|CK768963
EST:     GATGCCCAAAGTGCTATAAATGATTTGACTG                         GAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG
genomic: GATGCCCAAAGTGCTATAAATGATTTGACTGgtaagataaa ... aacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatcatttgtatctaatttttttaatcttttaatgtttcccccaacacttcagGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGA
                             ttttaat  putative branch site (score: 3)
                                     tttccccca  CT-rich tract
      atttgtatctaatttt  TA-rich tract