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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatattcagtataactattaatttctttctgcatgcatttttgtggtaaagtttgttctgaattggttaacatttgtttcagGTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATACATTGATGAGTTGAAACAG

Basic information

species Glycine max
transcript GLYMA13G10700.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899544|gb|BE608512.1|BE608512
EST:     CAAGAGCGTCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAG                         GTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATA
genomic: CAAGAGCGTCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAGgtatgttata ... tttgtttcagGTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATA
EST: gi|298184589|gb|HO029802.1|HO029802
EST:     GGAGATCCAATTTTCTTCAG                         GTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATA
genomic: GGAGATCCAATTTTCTTCAGgtatgttata ... tttgtttcagGTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcatgcatttttgtggtaaagtttgttctgaattggttaacatttgtttcagGTTAAAAGAGCTTACAGCTCGGCCAGCAGCAGTTGAGCATGCTAATAAATACATTGATGAGTTGAAACAG
                                     ggttaac  putative branch site (score: 3)
                                             tttgtttc  CT-rich tract
                                       ttaacattt  TA-rich tract