1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcctgatgcggaattaatattctgtttgatacaacatatttacacgctcatctgttatgtacttggttccagtgttcttattgttctgtttgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
species | Glycine max |
transcript | GLYMA13G08090.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGAC GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAEST: gi|209700605|gb|BW670421.1|BW670421
genomic: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACgtaagctttg ... tgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
EST: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGAC GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAEST: gi|5508875|gb|AI855433.1|AI855433
genomic: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACgtaagctttg ... tgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
EST: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGAC GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAEST: gi|19346687|gb|BM891567.1|BM891567
genomic: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACgtaagctttg ... tgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
EST: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGAC GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAEST: gi|13481405|gb|BG510748.1|BG510748
genomic: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACgtaagctttg ... tgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
EST: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGAC GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
genomic: AATTGCTTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAAAATGACgtaagctttg ... tgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGA
gctcatctgttatgtacttggttccagtgttcttattgttctgtttgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
gtttgat putative branch site (score: 5)
ttctgttt CT-rich tract
ttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctgatgcggaattaatattctgtttgatacaacatatttacacgctcatctgttatgtacttggttccagtgttcttattgttctgtttgatgttcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCCGCACGAAAGTTAACAGAAGCAGCATTTTCTCGTGGGAGTGCAGATAACATTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- ctgatgc
- - - - - - - - - -ttctgtt
- - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - cacgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttcc