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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttccatttctggattatttgggcttcataaattacatttttgtctttttagaacaggataggcttattagttttgcttttgtatgtgactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAAGGGGTAGGAATGCGGC

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417616|gb|FK382986.1|FK382986
EST:     GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG                         GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: gi|208218482|gb|GE020490.1|GE020490
EST:     GGTTTCGTGTTTCGAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG                         GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: gi|193323651|gb|FK290503.1|FK290503
EST:     GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG                         GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: gi|22540977|gb|BU090820.1|BU090820
EST:     GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG                         GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
EST: gi|193621277|gb|FK566803.1|FK566803
EST:     GTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATAG                         GATTCTGGTTTTAACCGTA
genomic: GTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAAT-Ggtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTA
EST: gi|208219813|gb|GE018937.1|GE018937
EST:     GGTTTCGTGTTTCGAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG                         GATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT
genomic: GGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGgtgtgtttgt ... gactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttagaacaggataggcttattagttttgcttttgtatgtgactgcatagGATTCTGGTTTTAACCGTATGCATTCCGGCGAAGTTGCTTCTCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAAGGGGTAGGAATGCGGC
                      ttattagtttt  TA-rich tract