Sequence
atgc intronic sequence ATGC exonic sequencegttggatctttttcctcctaatatagtatgcaaggttgagattctatgtgggtccaattctattttgcatattgtacttgtagGTCAGAGGCAAAGGATATGTTAGGGGATGATTGGGTGCAAATACATAGAAGAATTGTTCAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAG
Basic information
species | Glycine max |
transcript | GLYMA13G05040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G05040.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G52340.1 (Arabidopsis thaliana), 3'ss of exon 8
gttggatctttttcctcctaatatagtatgcaaggttgagattctatg----tgggtccaattctattttgca--tattgtacttgtagGTCAGAGGCAAAGGATATGTTAGGGGATGATTGGGTGCAAATACATAGAAGAATTGTTCAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAG
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gtttggttctgtttcttcggctccatctttcttaaacagaaccagaaaagcctaaacataatcctgagttagagttacatttttcacagGTCAGAAGCAAAAGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGAATTGTACAACAACATGCAAATCAGTACAAGAGAGTTTCTTGGGCAAAG
upper sequence: GLYMA13G05040.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g02340.t01 (Vitis vinifera), 3'ss of exon 8
----gttggatctttttcctcctaatatagtatgcaaggttgagattctatgtgggtccaattctattttgcatattgt-acttgtagGTCAGAGGCAAAGGATATGTTAGGGGATGATTGGGTGCAAATACATAGAAGAATTGTTCAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAG
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gtttgttatatctttttagcttgattgttg-atctgaattt---atgctgtgtaaatagtttctcctttttattgttctcatccttagGTCAGAAGCAAAGGATTTGTTGGGGGATGATTGGGTGCAAATACACCGAAGGATTGTACAGCAGCATGCAAACCAGTATAAGAGGGTATCTTGGGCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaaggttgagattctatgtgggtccaattctattttgcatattgtacttgtagGTCAGAGGCAAAGGATATGTTAGGGGATGATTGGGTGCAAATACATAGAAGAATTGTTCAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAG
aattctatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggatctttttcctcctaatatagtatgcaaggttgagattctatgtgggtccaattctattttgcatattgtacttgtagGTCAGAGGCAAAGGATATGTTAGGGGATGATTGGGTGCAAATACATAGAAGAATTGTTCAGCAACATGCAAATCAATATAAAAGGATCTCTTGGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG