1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taacagaggagatcaaattaatgactttttccctcttttcttctttcttaactgtgcaacccaccttatatcttccaataatatgatataaacgatgcagTTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGCATTGCTGTTGATACCTATCTCCAAGTGGGAAGATTTAACAGATGACAA
species | Glycine max |
transcript | GLYMA13G04410.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAA TTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGEST: gi|10231564|gb|BE800452.1|BE800452
genomic: ATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAAgtatgttaac ... aacgatgcagTTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGG
EST: AATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAA TTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGG
genomic: AATAGATGGCACAGATAGGCCTGATCATGTGGATCTAGCTGCTCTTGAAAgtatgttaac ... aacgatgcagTTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGG
tcttaactgtgcaacccaccttatatcttccaataatatgatataaacgatgcagTTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGCATTGCTGTTGATACCTATCTCCAAGTGGGAAGATTTAACAGATGACAA
tcttaac putative branch site (score: 2)
ttatatcttccaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacagaggagatcaaattaatgactttttccctcttttcttctttcttaactgtgcaacccaccttatatcttccaataatatgatataaacgatgcagTTTATAGAGATAGAGAGAGGAGTGTGGCTAGATACAACCAATTCAGGAGGGCATTGCTGTTGATACCTATCTCCAAGTGGGAAGATTTAACAGATGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - actgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcca