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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttaactgcttaccatgtgtccatttgccacaacgaattctgtgtccagatttggttctaaactggtttggagcttttatttcagGTTACTACATCAATATACAATCTCATATTGGGGAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAACCAAGACTACTCTTGTAATCTGA

Basic information

species Glycine max
transcript GLYMA13G02610.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G02610.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S18_231V6.1 (Physcomitrella patens), 3'ss of exon 7
--gtatattttaactgcttaccatgtgtccatttgccacaacgaattctgtgtccagatttggt--tctaaactggtttggagcttttat-------ttcagGTTACTACATCAATATACAATCTCATATTGGGGAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAACCAAGACTACTCTTGTAATCTGA
   | | |||| ||   |     ||  | ||| |   |  |     ||  | |  | ||||  |  ||   ||  |||     |  ||||       ||||||| || ||||||||||||||| | || || ||||||||||||   || ||||||||||||||||| |||||||| ||||  || |||||    ||  |||
ggatgtgttttgac--atacatgtgcattcatattagaagatcttctcattattaaaatttcatattccttacctgttctagacacttatgataatgttcagGTCACAACATCAATATACAATTTGATTTTAGGGAAGCTGTATGTGGACCATTATGGTACAATGCGCATACAGGGCAACCGGGAGTACTCGATAAAATTGA

upper sequence: GLYMA13G02610.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ15167 (Selaginella moellendorffii), 3'ss of exon 6
gtatattttaactgcttaccatgtgtccatttgccacaacgaattctgtgtccagatttggttctaaactggtttggagcttttattt-cagGTTACTACATCAATATACAATCTCATATTGGGGAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAACCAAGACTACTCTTGTAATCTGA
                                               ||      |   |  | |  | |||| |    |  |  ||  ||||| || |||||||| |||||||||||| | || ||||| || |||||||| || || |||||||| || || |||||||  |||   || || || || |
-----------------------------------------------gtagttcaaacggcatttggattggtctaacaccgtacttgacagGTGACCACATCAATTTACAATCTCATACTAGGAAAGCTTTACTGTGATCACTACGGCACAATGCGCATTCAAGGAAACCGCGACATGTCCTGCAAGCTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacgaattctgtgtccagatttggttctaaactggtttggagcttttatttcagGTTACTACATCAATATACAATCTCATATTGGGGAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAACCAAGACTACTCTTGTAATCTGA
                         ttctaaa  putative branch site (score: 2)
                                           cttttatttc  putative PPT
                                            ttttatttca  TA-rich tract