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...tacggatttgttgtgttttctataataaatgaagatgaccggcttaatagctaattagaatatcccttgctatattcttaaaaatcctttgtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAGTGGGAGCAGATTGCAATTCCTACAAG
species | Glycine max |
transcript | GLYMA13G01360.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAEST: gi|192332064|gb|FK026344.1|FK026344
genomic: GTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
EST: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAEST: gi|51337091|gb|CO980957.1|CO980957
genomic: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
EST: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAEST: gi|302141303|gb|HO212179.1|HO212179
genomic: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
EST: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAEST: gi|15203215|gb|BI425983.1|BI425983
genomic: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
EST: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAEST: gi|192332065|gb|FK026345.1|FK026345
genomic: TGCACACAGGGCTGGTTTTTCACACCTTGCGTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
EST: ACACCTTGCGTAAGTGATCCAGGTCTAAG GGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
genomic: ACACCTTGCGTAAGTGATCCAGGTCTAAGgtaagataat ... gtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGA
aatagctaattagaatatcccttgctatattcttaaaaatcctttgtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAGTGGGAGCAGATTGCAATTCCTACAAG
agctaat putative branch site (score: 3)
tcctttgt putative PPT
tatattcttaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacggatttgttgtgttttctataataaatgaagatgaccggcttaatagctaattagaatatcccttgctatattcttaaaaatcctttgtgtcattagGGGACTCAAAAACATTTTGCGGATGCATATCAAAAGGGCCAATAGCTCAGAGTGGGAGCAGATTGCAATTCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT