Sequence
atgc intronic sequence ATGC exonic sequencegtacacataagaatacatacacatacactgatgcagacaaaagccaaaagcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
Basic information
species | Glycine max |
transcript | GLYMA13G01190.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 8
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 6
gtacacataagaatacatacacatacactgatgcagacaaaagccaaaagcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
| ||| | | || || | ||||| || | | | | ||| | ||| | | || ||||||||||||||||| ||||| ||||| |||||| | |||||||| || || || || || |||||||||||||||||||| |||||||| | |||||||
---gttctgttgttactcatctgatctctcatata-acaaagagtaagcttatatgtttctcataaatt----ttgtctttctttttccttccagATTGGTGATTTGGGGTTATCGAAGGTGAAACAGAAGACTCTAGTATCAGGAGGTGTTCGTGGGACTTTGCCATGGATGGCACCTGAGCTCTTGAGTGGGA
upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 5
--gtacacataagaatacatacacatacactgatgcagacaaaagccaaaagcaacctgctagcggagatt---gaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
|| || | | |||| | ||| | | | | || | | | |||| || | | | | || || |||||||||| |||||||||||||||||||||||||| || |||| || || || || || || || | || |||||||| || ||||| ||||||||||
tttagcagattatgttgcatatttacttgctgtacctaatagtaatcatatatattaaatgggattggatttgggagcttatccatttcatatcttgtagATTGGTGACTTGGGTTTATCAAAGGTTAAACAGCATACGTTAGTATCAGGAGGTGTTCGTGGAACACTTCCTTGGATGGCACCAGAGCTTCTTAGTGGGA
upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 8
lower sequence: EFJ30928 (Selaginella moellendorffii), 3'ss of exon 3
gtacacataagaatacatacacatacactgatgcagacaaaagccaaaagcaacctgctagcggagattgaaatgag-atttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
| | | | | | | | ||| | |||| |||| | ||| ||| |||| ||| |||| | || || ||||| | || || | ||||||||||| || || || |||||||| ||||||||||||||||| | ||
-----------------------------------gtaatgatatcttcgtctctcgttctttcactttgtagtgagtgactgtgcacgtttccagGTTGGAGATCTGGGACTGTCGAAAGTTAAGCGCCAGACAATGGTGTCTGGTGGCGTCCGAGGAACTTTGCCGTGGATGGCTCCTGAGCTCTTGAGCACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagccaaaagcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
tttttc CT-rich tract
atttgtgtaattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacacataagaatacatacacatacactgatgcagacaaaagccaaaagcaacctgctagcggagattgaaatgagatttgtgtaatttttcagATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACTTTGCCATGGATGGCTCCTGAGCTACTTAGTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA