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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttagaatagtagttattcagttgcaaatcagttatgccatatgtaaagtataatctgacatgaatactactcatgcagGGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTAC

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00990.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 8
--gtatgttagaatagtagttattcagttgcaaatcagttatgccatat-gtaaagtataatctgacatgaatactactcatgcagGGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTAC
    |   |  |   |    | |||  || |     | |  || | | |       | ||||||  | |   |    ||  |  || |||||||| ||||| | || ||||||||||||||| |  |||||||| ||||| |  |||||||||||||||||| | || |  ||| ||||
gtacaaaatccagccgcttcttttctttttccttataatcttgtcttgttacttgatctaatcttgctttt-tttggcttttaaagAGCAAATGTCGCTGTTAAAAGGGAGCTTCATACTCCCGAGTCTGATCGTTCTTGTATCCATTTGGAATTTGACATTGCTGGAAGTGGACTTAC

upper sequence: GLYMA13G00990.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 3'ss of exon 8
gtatgttagaatagta------gttattcagttgcaaatcagttatgccatatgtaaagtataatctgacatgaatactactcatgcagGGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTAC
||||   ||||   |       |  | | | ||   |||   ||||    | |||||  | |||  |||   | || ||   |||| || || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| || ||| ||||||| ||||| || ||||| ||| ||||
gtatcaaagaaagctttgccttgcaacttaattctcaattttttattgtttctgtaa--tctaaaatgattggcat-ctctgcatgaagAGCTAATGTGGCTGTGAGGAAGGAGCTTCATACCCCTGCATCCGATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatcagttatgccatatgtaaagtataatctgacatgaatactactcatgcagGGCAAATGTGGCTGTGAGAAAGGAGCTTCATACTCCTGCATCTGATCGATCTTGCACTCATTTGGAATTTGACATTTCAGGCACGGGAGTTAC
                             atctgac  putative branch site (score: 3)
               atatgtaaagtataat  TA-rich tract