1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taccaaaatggccaaatcccttatctctagtccaattgcatattttagtaataataaaattaacttgggcatttttttttattgttgtttaaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGATGTAAA
species | Glycine max |
transcript | GLYMA13G00950.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCA GCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAEST: gi|7795291|gb|AW780688.1|AW780688
genomic: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAgtgagtcatc ... aaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCA
EST: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCA GCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAEST: gi|37995737|gb|CF807326.1|CF807326
genomic: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAgtgagtcatc ... aaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCA
EST: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCA GCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCANATTCAEST: gi|17021856|gb|BM092890.1|BM092890
genomic: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAgtgagtcatc ... aaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCA
EST: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCA GCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAEST: gi|6481417|gb|AW200688.1|AW200688
genomic: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAgtgagtcatc ... aaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCA
EST: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCA GCACCCAAGAAGAAGCTGCTGANGCCTATGACATTGCTGCTATCAAATTCA
genomic: GAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGAACTTTCAgtgagtcatc ... aaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCA
tagtaataataaaattaacttgggcatttttttttattgttgtttaaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGATGTAAA
aattaac putative branch site (score: 2)
atttttttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccaaaatggccaaatcccttatctctagtccaattgcatattttagtaataataaaattaacttgggcatttttttttattgttgtttaaaaaattagGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTCACAAACTTTGACATGAGTCGCTACGATGTAAA
-accaaaa
- - - - - gccaaat
- - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa