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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgctctttcttggttttaacttttgattttgttgatttttattttgtccatccaaacaacaaactatcatcaatgtttgagtagtttgagtttcaataaagcaaatgactcctcatttcagGCCCTAGACAAACCTGCTCCTGTTAGAATATCGTCTTTATTGACATCTCGGCATCTCTCACAACGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA

Basic information

species Glycine max
transcript GLYMA12G36350.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36350.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0025g03150.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------------------------------gtaaatgctctttcttggttttaacttttgattttgttgatttttattttgt-ccat--ccaaacaacaaactatcatcaatgtttgagt--agtttga-gtttcaataaagcaaatgact-cctcatttcagGCCCTAGACAAACCTGCTCCTGTTAGAATATCGTCTTTATTGACATCTCGGCATCTCTCACAACGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA
                                                                |   |  || || ||  |      || ||||     |   |  | || ||| ||||  ||  | |     || | |  ||   | |  |  | |||   || | |||  | |  ||||   | |     ||||   | ||||| |||||||||||||||||||| || |||||||| ||||| || ||||| ||| | || || ||| | ||||  |||||||||||| |||
gtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgctactcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcaatgtttgagtagtttgagtttcaataaagcaaatgactcctcatttcagGCCCTAGACAAACCTGCTCCTGTTAGAATATCGTCTTTATTGACATCTCGGCATCTCTCACAACGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA
                                          ctcctcatttc  CT-rich tract
                        tttcaataaa  TA-rich tract