1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcatttttttttatataaatatgaagggtttaaccacttgtgtaaacatttatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAG
species | Glycine max |
transcript | GLYMA12G31100.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCTCTTGTGGCTTCAA-TAGGATAGGAAAGGAGATA-TAGAGACTGAAEST: gi|207831349|gb|GD802523.1|GD802523
genomic: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtaggttttg ... gaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAA
EST: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAAEST: gi|58025178|gb|CX711919.1|CX711919
genomic: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtaggttttg ... gaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAA
EST: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTG GTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAA
genomic: CTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGgtaggttttg ... gaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAA
acatttatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAG
atttgat putative branch site (score: 5)
atatttgatcaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttttttttatataaatatgaagggtttaaccacttgtgtaaacatttatgtttaaactttccaacatatttgatcaaataattttggaaaatgcagGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - -tatgaag
- - - - - - - - - - - - - - - - -ccacttg