1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttacttaatttttccaccataattatgttctattaatttagtttttcatgtctaacgtgtttgctaacttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAG
species | Glycine max |
transcript | GLYMA12G29550.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|58017030|gb|CX703772.1|CX703772
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|58024880|gb|CX711621.1|CX711621
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|254323994|gb|GR836226.1|GR836226
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|21889841|gb|BQ743054.1|BQ743054
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|19052857|gb|BM731524.1|BM731524
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|9902983|gb|BE611951.1|BE611951
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCEST: gi|57575124|gb|CX548099.1|CX548099
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
EST: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGT AATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
genomic: TTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCCAGTTCCTGAAAGTgtatgttact ... ttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTC
tatgttctattaatttagtttttcatgtctaacgtgtttgctaacttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAG
tgctaac putative branch site (score: 1)
tctattaatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttacttaatttttccaccataattatgttctattaatttagtttttcatgtctaacgtgtttgctaacttggtaacagAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC