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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaatacagtgcattagcaaatcatttggactttggatttgtttactttagggtgcctttttgcattttcttactccttcttgggatttgactatgcagGACTTCAGAAGCATTTTCTCCTGTTTGCTTGCCGAGATACAATGCTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGAT

Basic information

species Glycine max
transcript GLYMA12G29450.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9564602|gb|BE474111.1|BE474111
EST:     TGATATGCTGGCTGT-GGCCCAACTTTGT-ATGTCATCAGAATGCTTTAA                         GACTTCAGAAGCCATTT-CTCCTG
genomic: TGATATGCTG-CTGTTGGCC-AACTTTGTTATGTCATCAGAATCCTTTAGgtaagtagaa ... gactatgcagGACTTCAGAAGC-ATTTTCTCCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttagggtgcctttttgcattttcttactccttcttgggatttgactatgcagGACTTCAGAAGCATTTTCTCCTGTTTGCTTGCCGAGATACAATGCTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGAT
                    attttctta  TA-rich tract