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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggatctcttgtgaatttcagtcttattgatgattttaattctcatataaaatatctctgttgataaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG

Basic information

species Glycine max
transcript GLYMA12G19010.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G19010.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 3'ss of exon 9
gtagggatctcttgtgaatttcagtcttattgatgattttaattctcatataaaatatctctgttgataaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG
                           |||| ||  ||  || | |    |||   ||  || |  |  |   | ||  | | | |        |||   |  || | |||||||||||||| || || ||||| ||| || | ||||| ||||| || |||||||  |||||| | |||||||||||||| || || || ||  
--------------------------gtattcattcttccaagttt---gtaatgaattgctatccaccacaaattgcttctgaatcagaaagatgttgatatagGTGTTAAGGAGACCAAGAATTGGGGCAGGCTACAAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGTCGTTGTGAAGTCACTGCGATTCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatatctctgttgataaagcagtggcttttatttgtttctttgtaattccagATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTG
           tgttgat  putative branch site (score: 4)
                                      tttctttgt  putative PPT
                             ttttatttgtttcttt  TA-rich tract