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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattactattatactgggtttgatagataatatgccattgacctcactagggttctattaatgcatgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA

Basic information

species Glycine max
transcript GLYMA12G14060.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14060.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ04838 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtattactattatactgggtttgatagataatatgccattgacctcactagggttctattaatgcatgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA
             | |  |  | | || | || |         ||| ||    | |  |   |   ||| |    ||||||||||||||||||||||| ||||||||  | |||||||| ||    || ||  |  |||  |  ||||  ||||||||   ||| |||||||| ||||
------------gtaaccccagatgtgttcgaca---------tgagcttgtaatgaattcctc--tgctt----tagGAATGTCGTGAAGCCTGTGGCGGACAAGGTTTAAAATCTGAGAACAAAGTCGGGCAGCTCAAAGCAGAATACGATGTGCAACTGACGTTTGAGGGCGACA

upper sequence: GLYMA12G14060.1 (Glycine max), 3'ss of exon 8
lower sequence: EFJ13387 (Selaginella moellendorffii), 3'ss of exon 9
gtaagtattactattatactgggtttgatagataatatgccattgacctca-ctagggttctattaatgcatgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA
                          |  ||   | |||   | ||| | | || |   |  |||    | ||   ||||||||||||||||||||||| ||||||||  | |||||||| ||    || ||  |  |||  |  ||||  ||||||||   ||| |||||||| ||||
--------------------------gtaagcccagatgtgttcgacatgagcttgtaatgaatt--cccctgctttagGAATGTCGTGAAGCCTGTGGCGGACAAGGTTTAAAATCTGAGAACAAAGTCGGGCAGCTCAAAGCAGAATACGATGTGCAACTGACGTTTGAGGGCGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326408|gb|FK017695.1|FK017695
EST:     CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGCACTCTCCAG                         GAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
genomic: CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGCACTCTCCAGgtaagtatta ... catgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
EST: gi|19453582|gb|BM954992.1|BM954992
EST:     CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGCACTCTCCAG                         GAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT
genomic: CTAGTGCTTACAAGGCTACTTTAACTTGGAATAATATGCGCACTCTCCAGgtaagtatta ... catgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatagataatatgccattgacctcactagggttctattaatgcatgaaatagGAATGTCGTGAAGCCTGTGGAGGACAAGGAGTTAAATCTGAAAATCGTGTTGGCAATTTCATGGGTGAATTTGATGTGCATTCGACATTTGAGGGGGACA
                                     tattaat  putative branch site (score: 2)
     tagataatat  TA-rich tract