1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttcattgttgacattgatagagtttagagatgtatgaaatacctaaaatatcttaggttcaagacctgatgttgcaactttgtttttctttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCATTCACCGTTGTTACGGATAGAGGAAAACTGGCTATAGCAGAAAAGGAATT
species | Glycine max |
transcript | GLYMA12G14000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGGGAGGATGCTGGTGAAAG-CAGAGGGTGGTACAGTAGTTEST: gi|298193864|gb|HO040512.1|HO040512
genomic: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTT
EST: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCATEST: gi|208205501|gb|GE004946.1|GE004946
genomic: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCAT
EST: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAG GTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCAT
genomic: AGAAGAATGGCCTTGATTCTAAATCAAAGAAGACAAGGGTACTTGTTGAGgtaattatac ... ttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCAT
aaaatatcttaggttcaagacctgatgttgcaactttgtttttctttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCATTCACCGTTGTTACGGATAGAGGAAAACTGGCTATAGCAGAAAAGGAATT
ctttgtttttctttgt CT-rich tract
tttttctttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcattgttgacattgatagagtttagagatgtatgaaatacctaaaatatcttaggttcaagacctgatgttgcaactttgtttttctttgttttcagGTTGAGCGGGAGGATGCTGGTGAAAGACAGAGGGTGGTACAGTAGTTGCATTCACCGTTGTTACGGATAGAGGAAAACTGGCTATAGCAGAAAAGGAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - tgttgac
- - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca