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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccctattttcatcgagttatatttcaagcattacctataactttgtttggctgtaagcatattggatcttgcaagcttggtgacttggtgacttggtgaatatttgattatttgcatcaggtcaggtacctagatttttatctcagatggagtgatctgattcgtcctgagcagAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAA

Basic information

species Glycine max
transcript GLYMA12G08950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0061g01180.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------gttccctattttcatcgagttatatttcaagcattacctataactttgtttggctgtaagcatattggatcttgc---aagcttggtgacttggtgac--ttggtga--atatttgattatttgcatcaggtcaggtacctagatttttatctcagatggagtgatctgattcgtcctgagcagAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAA
                                  | | | ||  | |    |  |||||     |  |         ||| | ||    |  || ||   || |||    ||  || |  |  |  | |   ||    |  | || |    ||||  |||||||||| ||||| ||  || || | |||||| |||||||  |||||||||||||||||||||| ||||  ||||||| ||| || |||||||||||||| |                                                      
gtttgttcatatttactcagtgctgttatgattatacttcttgcccttctctcctattttggatagcatactatttgttgctcggtc--agacagatccaattttgtggtaaagtttgcaatattctaatctttaacaacaaaatatttccattttaatcagGTCAGATACCTTGACCTTCATATAAGATGGGGTGATCTTGTTCGTCCTGAGCAGAACATCCAAGATGTTAAAGGTCCAGAAACAGAAGCTTCTGCTTTTA------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcaggtacctagatttttatctcagatggagtgatctgattcgtcctgagcagAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAA
                                   atctgat  putative branch site (score: 4)
                                         ttcgtcct  CT-rich tract
           tagatttttat  TA-rich tract