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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgacatatcatttatgttagatgctcatactcttatttatgaatgtgctttaaaatggtttgatcaatttagtgatttttttcttttctggaaaagcagAATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 3'ss of exon 8
atgacatatcatttatgttagatgctcatactcttatttatgaatgtgctttaaaatggtttgatcaatttagtgatttttttcttttctggaaaagcagAATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
 |   || |   || | |    ||||    |||| | ||     |         |||| | |  ||||       | | |||   |      |||| ||| || |  | ||   ||| ||||| || || ||| || || ||||| ||   |||||||| |||||||| ||||||||||||||||| | |||  ||
gtatgatcttcattgtttagcgtgctt---ctctcacttcatggttcatcacctaatgctgtcttcaa-------actgtttctatggggaaaaaaacagGATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGAAGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAG

upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 8
atgacatatcatttatgttagatgctcatactcttat-ttatgaatgtgct----ttaaaatggtttgatcaatttagtgatttttttcttttctggaaaagcagAATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
 |  | | | ||||   |||  | | | |  | |||   |   | ||||      | || |   ||||     |||| || |||| | || ||    || | ||||||||||| |||  ||| ||||| ||||| ||||| ||| ||||| |   ||||||||| ||||||| |||||| |||||||||||||  ||||||
-ttgcct-tgatttcaattaccttccctttttgttacactggaagtgtgtagctatcaatacaatttggatc-tttattgcttttctcctcttt--aaacaacagAATATAGTGCATGGGGACATTAAACCAGACAATCTTTTGGTTACTCGCACTGGTACAGTGAAGATAGCGGATTTTAGTGTCAGCCAGGTATTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctttaaaatggtttgatcaatttagtgatttttttcttttctggaaaagcagAATATAGTACATCTGGATATTAAGCCAGATAATCTGTTGATTACTTGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
             gtttgat  putative branch site (score: 5)
                               tttttttcttttctg  putative PPT
                     aatttagtgatttttt  TA-rich tract