Sequence
atgc intronic sequence ATGC exonic sequence...ttgatttaaataccttgatttagttaatcataatttcttttttaccatttcatgttggactctttatttgttgcttctcacataaaattttgtgttacagTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG
Basic information
species | Glycine max |
transcript | GLYMA12G06980.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 9
ttgatttaaataccttgatttagttaatcataatt--tcttttttaccatttcatgttggactctttatttgttgcttctcacataaaattttg--tgttacagTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG
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--agcatacttac--tgaattgataatttaagccccatcttacttgctttataacattgtaaccttcaattctcatcttttgtttttttcttttgttgttgtagTGGTGAACCTTTGACAGTTCAGGCTCCTGGAACACAGACTCGCAGTTTCTGCTATGTCTCTGACATG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 8
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 3'ss of exon 9
ttgatttaaataccttgatttagttaatcataatttcttttttaccatttcatgttggactctttatttgttgcttctcacataaaattttgtgttacagTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG
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---------gtactggtcctcaaggtctcaaaattcaatattt-ccttaacttaatgaactc-------aacacatttgacatgatgtacgggtgtgtagAGGGGAGACGATGACGGTGCAGGCTCCAGGCACTCAAACTCGTAGTTTTTGCTACGTCTCTGATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209703510|gb|BW656548.1|BW656548EST: AATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCG TGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTG
genomic: AATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCGgtaattcctt ... tgtgttacagTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttcatgttggactctttatttgttgcttctcacataaaattttgtgttacagTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG
ttctcac putative branch site (score: 2)
ataaaattttgtgtta TA-rich tract