1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCG
species | Glycine max |
transcript | GLYMA12G06980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCG AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGEST: gi|192298392|gb|FG989143.1|FG989143
genomic: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
EST: CGTGTTGCAGAAACTTTTGATGTTTGATTATCATAGGCAGCACGGAATCG AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGEST: gi|209703510|gb|BW656548.1|BW656548
genomic: CGTGTTGCAGAAACTTT-GATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
EST: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCG AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGEST: gi|192330026|gb|FK020842.1|FK020842
genomic: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
EST: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCG AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
genomic: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
ttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCG
caataac putative branch site (score: 2)
tgcttattttcatttt putative PPT
atgcttattttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA