Sequence
atgc intronic sequence ATGC exonic sequence...aataaagtaatttttctcttatactttgctgatatattggtgaggtcactaataccttaaagttccttatcattgtcatttcctctgatttattatgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGG
Basic information
species | Glycine max |
transcript | GLYMA12G06690.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06690.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------------------------aataaagtaatttttctcttatactttgc-----tgatatattggtga-----ggtcactaataccttaa-agttccttatcattgtcatttcctctgatt-tattatgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGG
|| || | | ||||||||||| || ||||| ||| | | | ||| ||| ||||| ||||| || | | || | || | ||||| |||||| | |||||||| ||| | || ||||| |||||||| || || |||||||| || ||||||||||| ||||| || ||| ||| | ||||
gtatgtcgtttcttttccgttttacatttttactggcctttgctagggtt-ctgtgtgattatactttgcaaccttgggttattgttgaccaacattgtttgactttttagcggttgcttatgcttgtcgttggtttttcttgttttcttcagGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAACTTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCTCTTGG
upper sequence: GLYMA12G06690.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 8
aataaagtaatttttctcttatactttgctgatatattgg---tgaggtcacta-ataccttaaagttccttatc-attgtcatttcctctgatttattatgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGG
| | | || | || | ||||||||| | | | | |||| | | || || || || | | ||| | |||||||||||||||||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||||||||||| || ||||| ||||||||||
-----acttgtcattagcacatgcattgctgatacttgagctgtaaaaagactatgtgctgataaattgtcaattgatcactgcgttattgcttttctgttgcagGTTTGGCATGTTGCTGATGTTCCTGAGGGCGACAAATTTCAGTACACTCATTTTGCACATAAAATAAACAGCTTTGACACAGCTCCTAGGAAGTTGTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcactaataccttaaagttccttatcattgtcatttcctctgatttattatgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGG
tgatttattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataaagtaatttttctcttatactttgctgatatattggtgaggtcactaataccttaaagttccttatcattgtcatttcctctgatttattatgcagGTTTGGCATGTTGCTGATGTTCCCCAGAATGACAAATTTCAGTATACACATTTTGCTCATAAAATAAACAGCTTTGACACTGCCCCTAGAAAGTTGTTGG
- - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - ggtgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcctt