1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgttatgatatgcacatttaatttcaagcttatggttatcatatgtgaagttatttatgatatatagttttatgaaccggtcatgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC
species | Glycine max |
transcript | GLYMA12G06450.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAEST: gi|193654491|gb|FK597801.1|FK597801
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
EST: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAEST: gi|207799718|gb|GD770565.1|GD770565
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
EST: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
tgtgaagttatttatgatatatagttttatgaaccggtcatgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC
agttatttatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttatgatatgcacatttaatttcaagcttatggttatcatatgtgaagttatttatgatatatagttttatgaaccggtcatgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC
- tgttatg
- - - - - tatgcac
- - - - - - - - - - - - ttcaagc
- - - - - - - - - - - - - - - - - - - - -catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa