1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtatcactaatatgcacatttaatttcaattttattgttatcatatgttaaggtatttattatatatagtgtatgaaccggtcatttaatttcttgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAAACTTGTACAGCTAACTGAGGCTAGTGAGAGCTGCTTCTTCGG
species | Glycine max |
transcript | GLYMA12G06430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAG AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|193408462|gb|FK371962.1|FK371962
genomic: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGgtacttactc ... tttcttgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAG AAAGGAGAATTGCTGCTCAGGCTTCCTCCTCAACCTGCTTAGGTGGCTTAGEST: gi|10238836|gb|BE807724.1|BE807724
genomic: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGgtacttactc ... tttcttgcagAAAGGAGAATTGCTGCTCAGGCT-CCTCCTCAACCTGCTTAGGTGGCTTAG
EST: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAG AAAGGAGAATTGCTGCTCANGCTCCTCCTCAACCTGCTTANGTGGCT
genomic: CTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGgtacttactc ... tttcttgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCT
atgttaaggtatttattatatatagtgtatgaaccggtcatttaatttcttgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAAACTTGTACAGCTAACTGAGGCTAGTGAGAGCTGCTTCTTCGG
atttaat putative branch site (score: 4)
tttcttgc CT-rich tract
tatttattatatatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatcactaatatgcacatttaatttcaattttattgttatcatatgttaaggtatttattatatatagtgtatgaaccggtcatttaatttcttgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAAACTTGTACAGCTAACTGAGGCTAGTGAGAGCTGCTTCTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac