1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatgtgttcttcactaatttttttgtagttcttagtagagcaggatcttgcttgtaaaatgatagtattaatccatttgtgccctttcattgtatcacagCTGTCCTTTCCAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCCACGGCCATTG
species | Glycine max |
transcript | GLYMA12G06200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGGAAAAGATAGGCTACAAGGATGATGAAGATGTTGCAAATGAG CTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGEST: gi|193590433|gb|FK544463.1|FK544463
genomic: AAATTTTGGAAAAGATAGGCTACAAGGATGATGAAGATGTTGCAAATGAGgtaattcatc ... tgtatcacagCTGTCCTTTCCAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAG
EST: AAATTTTGGAAA-GATAGGCTACAAGGATGATGAAGATGTTGCAAATGAG CTGTCCTTTCAAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAG
genomic: AAATTTTGGAAAAGATAGGCTACAAGGATGATGAAGATGTTGCAAATGAGgtaattcatc ... tgtatcacagCTGTCCTTTCCAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAG
tcttgcttgtaaaatgatagtattaatccatttgtgccctttcattgtatcacagCTGTCCTTTCCAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCCACGGCCATTG
tattaat putative branch site (score: 2)
ccctttcatt putative PPT
ttgtaaaatgatagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtgttcttcactaatttttttgtagttcttagtagagcaggatcttgcttgtaaaatgatagtattaatccatttgtgccctttcattgtatcacagCTGTCCTTTCCAATGTGGACAAATCAAATACAAGAAACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTTCATGCTAGAGACTTCTCCACGGCCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttg