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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatggataaagagacttataccttgtcaaagttattagctcttcttagccttcactattaataataatgttaatttatttatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG

Basic information

species Glycine max
transcript GLYMA12G05010.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05010.2 (Glycine max), 3'ss of exon 8
lower sequence: AT4G34350.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagcatggataaagagacttataccttgtcaaagtta--ttagctcttcttagccttcactattaataataatgttaatttatttatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG
                    | |   | | |||||  ||  |||   |||   |  || || |   | | ||  | |  |||| |  ||  || || ||||||| ||||| ||||| |||||||  || ||| |||| ||||||||||| ||||| ||||| |||||||| || || || |||
-------------------gtaagcgcatttcaaaactaacttactccttaccaaactgcatt--cactgattttttctattt-tacattgat-agTATGGAGAACTGGTCGAGAAGGAAAACTTTCTCCCAAAGGGACCAATAACAATCGGTGTGACATCAGGTGCATCAACCCCGGATAAG

upper sequence: GLYMA12G05010.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv03s0063g02030.t01 (Vitis vinifera), 3'ss of exon 8
gtaagcatggataaagagacttataccttgtcaa--agttattagctcttcttag-ccttcactattaataata---atgttaatttatttatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG
        | || ||   | ||  ||||    ||  | || || |   || ||||  |||   |  |||| ||    ||   ||||  | ||| || |||||||| |||||||| ||||||||||||||||| ||||||||||| || || || ||||| ||||||||||| || || ||||| |||
--------gtatgaatgcaattcaacctcaaaaaccaattctttgtcttttttagatcttgtttcctaattatttccattggaattgttctatttaacagCATGGGGAGCTGGTTGAGAAAGAAAACTGGCTACCAGAGGGTCCTATTACGATAGGTGTTACATCTGGTGCCTCTACCCCAGATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020891|gb|CX707633.1|CX707633
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|58020718|gb|CX707460.1|CX707460
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|57575477|gb|CX548452.1|CX548452
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|58015332|gb|CX702074.1|CX702074
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|254332178|gb|GR843762.1|GR843762
EST:     AAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: AAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|31459482|gb|CD401510.1|CD401510
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGTTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|9259699|gb|BE347846.1|BE347846
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|12688382|gb|BG154718.1|BG154718
EST:     ACAGTGAGCAAAGAATTGGTCCAAGAAACAAAATATCATACAAGTTGAAC                         CATGGAGAGCTGGTGGATAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|14992063|gb|BI317736.1|BI317736
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|214009666|gb|DB990287.1|DB990287
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|254327965|gb|GR834930.1|GR834930
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|209727359|gb|BW663342.1|BW663342
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|207774807|gb|GD748059.1|GD748059
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCC
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCC
EST: gi|213602458|gb|DB982623.1|DB982623
EST:     CAAG-AAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: C-AGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|213602056|gb|DB976261.1|DB976261
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
EST: gi|58020548|gb|CX707290.1|CX707290
EST:     ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAAC                         CATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA
genomic: ACAGTGAGCAAAGAATTGGTCCAGGAAACAAAATAGCATACAAGTTGAACgtaagcatgg ... tatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagctcttcttagccttcactattaataataatgttaatttatttatctatcagCATGGAGAGCTGGTGGAGAAAGAAAACTGGCTTCCAGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACACCAGACAAG
                                       tttattt  CT-rich tract
                ttcactattaataata  TA-rich tract