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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttacactgacctttctgcttagtagccttaacatgtgttctactatatcaatcttactacatgctaactgttaattgcatgtggacattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG

Basic information

species Glycine max
transcript GLYMA12G04460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924506|gb|AW830532.1|AW830532
EST:     GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAG                         ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGgttatttaca ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: gi|208307684|gb|GE107166.1|GE107166
EST:     GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG                         ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGgttatttaca ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTA
EST: gi|193412559|gb|FK377790.1|FK377790
EST:     GTTGCCTCAGATTTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG                         ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGgttatttaca ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: gi|22524635|gb|BU083446.1|BU083446
EST:     GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATATTGAAG                         ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGgttatttaca ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
EST: gi|193725887|gb|FK660195.1|FK660195
EST:     GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAG                         ATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA
genomic: GTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGgttatttaca ... cattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatatcaatcttactacatgctaactgttaattgcatgtggacattttgcagATGATTCTCAGTGGTGAAGCACGGCGAGCAAGGCCAGTAGTAAAAGTTCTAAACAGTGAAGGGAAGGTTATTGCCTATGCCAGACCACAATATCCAATG
                            tgttaatt  TA-rich tract