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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaataacatgttactttcaatctgattcatgccagtttccatttgtttgctcatgcatttatagactcttacaactcgtagggtatagctattaaacctgatgaagtgatggtatcttctctatttgatgcagAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATGAACACCTGATCCGTATACATGATTCAGATTACCTCGAACGTTGAATTTT

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053979|gb|BM732646.1|BM732646
EST:     AACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAA                         AGACCTCAACATGGTTTATAGGTGAGGATTTGATGAATTGTGTTGAGAATG
genomic: AACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAgtacagaata ... tttgatgcagAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATG
EST: gi|7590267|gb|AW706023.1|AW706023
EST:     AACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAA                         AGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATG
genomic: AACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAgtacagaata ... tttgatgcagAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggtatagctattaaacctgatgaagtgatggtatcttctctatttgatgcagAGACCTCAACATGGTTTATAGGTGAGGATTTGATGAAGGGTGTTGAGAATGAACACCTGATCCGTATACATGATTCAGATTACCTCGAACGTTGAATTTT
                                  tatcttctctattt  CT-rich tract
 tattaaa  TA-rich tract