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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAA

Basic information

species Glycine max
transcript GLYMA12G03060.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03060.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G079256_T02 (Zea mays), 3'ss of exon 7
----gtacg-ataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAA
     |  | || || |  || ||| |     ||    | ||   ||       |||| | |||  |       ||| | | | |   |||| || ||  || || | ||||||||  |||  || || ||||||||||| || ||||||||||| || ||||||||||||||  | || || ||||| |
gttaatttgcatcaaaatctttatatttcttgttttgttgccaccatcagg--agtatttagttg-accttttcttttattatcacaaagGTAACAAAGTCACTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATTTCAGCATCTAGTTATTCTTATGTTTCTTTACTTCAACACTTCCTTCCCA

upper sequence: GLYMA12G03060.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 7
gtacgataaatacattaataataagcattgaagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAA
||||  |   |    |  |  | | | |   ||||      |   |||||||       || | ||| |   | |||| |  ||||||||||| ||  |||||||||||||  | || || |||||||| |||||||||||||| |||||||| || |||||||||||||||  |||  |||| |
gtactgt---tttgctggttgtgatcttatcagttgaccattcattttggtac------tttacaagtaaacatctcttaaatagGTGACCAAGCCTCTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963692|gb|BM270438.1|BM270438
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
EST: gi|192301956|gb|FG995574.1|FG995574
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
EST: gi|16347093|gb|BI972688.1|BI972688
EST:     ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAG                         GTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA
genomic: ACTTTGGCAGTATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacgataaa ... tctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcctttatgcatttggtatctggttttaataagaatttaactctgatgtagGTGACCAAACCATTGTTGGAGACATCTCGGAATGGGTATCTTGCTGCAATATCTGCATCTAGTTACTCATATGTTTCTTTACTCAAGCATTTTCTTCCAA
                           ttttaataagaattta  TA-rich tract