1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaacaagtctgacaccatatcttttgtccttaaaaagtcggtcaagtctaacaatcattccttatgtttggcttgtgcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGCAGAGCGGCACGATTGGCAGCTGCCGGCATTGTTGGTA
species | Glycine max |
transcript | GLYMA12G02450.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATCCTTAAAGGCATCCTTGAG ATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATEST: gi|22930633|gb|BU547780.1|BU547780
genomic: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATCCTTAAAGGCATCCTTGAGgtaaacaagt ... gcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGAT
EST: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATNNTTAAAGGCATCCTTGAG ATTNNNGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATEST: gi|208279944|gb|GE076306.1|GE076306
genomic: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATCCTTAAAGGCATCCTTGAGgtaaacaagt ... gcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGAT
EST: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATCCTTAAAGGCATCCTTGAG ATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGAT
genomic: ATTCTCCCGACTTGAGAGAAGTAGCAAGAATCCTTAAAGGCATCCTTGAGgtaaacaagt ... gcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGAT
aaaaagtcggtcaagtctaacaatcattccttatgtttggcttgtgcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGCAGAGCGGCACGATTGGCAGCTGCCGGCATTGTTGGTA
gtctaac putative branch site (score: 2)
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaagtctgacaccatatcttttgtccttaaaaagtcggtcaagtctaacaatcattccttatgtttggcttgtgcggtctcagATTCCTGATGTTCCTTTAAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGATGTGGTGACTCGCAGAGCGGCACGATTGGCAGCTGCCGGCATTGTTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC