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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttatgtttgactaccgtctgctgagggttgcggaaatactgcaacgtgactatgacatttatggtgttctgataatattgctttatgtgttaatccagGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGAATTGACACCCCAACAAGATTTGAGACGCCACAAGAGTAATGATCCATTT

Basic information

species Glycine max
transcript GLYMA12G02310.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328978|gb|GR833350.1|GR833350
EST:     AGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCT                         GGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGA
genomic: AGTGGTAAATTTCCTTGTCCATTTTTACAAGTGCAGTAGCTCGATGACCTgtgagttgtc ... gttaatccagGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtgactatgacatttatggtgttctgataatattgctttatgtgttaatccagGGTATAGTTTTGCTAATAATTTTGATATCGGGCCTTTGCTGCATGATGGGAATTGACACCCCAACAAGATTTGAGACGCCACAAGAGTAATGATCCATTT
                                            tgttaat  putative branch site (score: 3)
                            ataatattgctttat  TA-rich tract