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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctagttcgggtgtttatgttgatgaggcttttttgcatgttgtcgtcaaggtggattggtttgttgtttagtttattaaattttgatgtcggtttggtcttttttgtgcaacatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGCCACCACCATCATGACGGCTATCACCATCAATCTTCAGTACTATACTAC

Basic information

species Glycine max
transcript GLYMA12G01350.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588544|gb|AW704267.1|AW704267
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: gi|193541819|gb|FK496589.1|FK496589
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: gi|9903216|gb|BE612184.1|BE612184
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: gi|27445790|gb|CA952913.1|CA952913
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: gi|27425986|gb|CA937506.1|CA937506
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
EST: gi|10846400|gb|BF069308.1|BF069308
EST:     TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG
genomic: TGTTCGCAGGCACCGGTGGACCGATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagtttattaaattttgatgtcggtttggtcttttttgtgcaacatttacagGAAGTGAAAGATGACTAAAGAAACCCGGACAGATATAATTGAGAATCACCGCCACCACCATCATGACGGCTATCACCATCAATCTTCAGTACTATACTAC
               ttttgat  putative branch site (score: 4)
      tttattaaattttgat  TA-rich tract