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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttcagagaatcctattgttgcttttatccttcaatttgtgataactgaaaaaactattgctcgtgcagGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATG

Basic information

species Glycine max
transcript GLYMA12G01250.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01250.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtgttc-agagaatcctattgttgcttttatccttcaatttgtgataactgaaaaaactattgctcgtgcagGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATG
||||||| |  |||  ||   | ||    |||     |  | ||  ||     |||||||    ||  |  ||||||| ||||||||  |||||||||| ||| | || ||||| |  |||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||
gtgagtgcttgagaagatgtgactga-attttctgattctatttcttggctgatgaaaaactatttaattttgcagGCTTGGGGTGTCAGAAAAATTACACTACTGGATAATGGTAAAGTGGCTATGTCTAATCCATTGAGGCAGTCCCTATATACATTGGATGACTGCCTTAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317615|gb|GR826599.1|GR826599
EST:     TTCTCCTCGGAGCTGGAACACTTGGATGCCAGGTTGCGCGCATGCTTATG                         GCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATG
genomic: TTCTCCTCGGAGCTGGAACACTTGGATGCCAGGTTGCGCGCATGCTTATGgtgagtgttc ... gctcgtgcagGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgcttttatccttcaatttgtgataactgaaaaaactattgctcgtgcagGCATGGGGTGTTCGAAAAATTACTCTAGTTGACAATGGAAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTTATACTTTGGATGACTGTCTTAATG
                         tgataac  putative branch site (score: 2)
                                  aaaaaactatt  TA-rich tract