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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttattatctatttctttgttgtaagagtcattcttaaactgatttgtgatggtttattgtttgacatgttattgatgcttcttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT

Basic information

species Glycine max
transcript GLYMA11G38160.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 3'ss of exon 8
gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttattat-ctatttctttgttgtaagagtcattcttaaactgatttgtgatggtttattgtttgacatgttattgatgcttcttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                                                                     |||  | | || | | |  ||| || | |||| |     |  ||| | ||       |  ||||    |  ||| | |    ||   ||||  ||||     |||||| ||||| ||||||||||||||||||||||||||||| || || || |||||| | || || || || ||||||||||||||  |||||||| ||||
------------------------------------------------------------------------------------tgtttgtat-atgtgtgacactacttgtatgttttggtgctttttcatgaaagttacagccatggaaactaattttataatgcatgtttgctcattttc----agGTCCTAATGGTAGTGGAAAAAGCTCCCTTTTCCGGGTTCTTGGGGGACTGTGGCCACTTATGTCAGGCCACATTGTGAAACCTGGTGTTGGCTCTAATCT

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G375807_T01 (Zea mays), 3'ss of exon 7
gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttat-tatctatttctttgttgtaagagtcattcttaaactgatttgtgatggtt-tattgtttgacatgttattg-atgctt---cttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                                                                          | |||| | | |  ||| | ||   || ||    |  |||||    || ||| ||   |||  |    | |  || ||||    ||| |   ||| |  |  |||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| || ||||||| |||||||| ||||||||  |||| ||  ||||
------------------------------------------------------------------------------------------ttttatgtgtatgcctaatgctgatttatatctat-gttctt---ttgctttatggaagttgcagccatgggaattttatgatgtgccttaacttctatttcagGTCCCAATGGTAGTGGAAAAAGCTCCCTTTTCCGTGTTCTTGGTGGTCTGTGGCCAATGGTATCTGGTCATATTGTCAAACCTGGTGTTGGTTCCAATCT

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G060045_T01 (Zea mays), 3'ss of exon 7
gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttattatctatttctttgttgtaagagtcattcttaaactgatttgtgatggtttattgt-ttgacatgttattgatgcttcttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                                                               |   ||  |     ||| |||     |  ||||||    || |   ||  || ||   || |   |||    | |||  | |||  ||   |    | |  |   |  |||||| ||||| || ||||||||||||||||| ||||| || || ||||| |||||| || ||||||| || ||||| ||||||||  |||| || |||||
-------------------------------------------------------------------------------tctcaaactcccaatatgtat-----acatctttgc-acaaaatgtatgtttgaa--aatctt--atgtcccactgtgctaacaattttacggatttacactccttccagGTCCCAATGGTAGCGGAAAAAGCTCCCTTTTTCGGGTCCTTGGGGGTCTATGGCCACTGGTATCTGGCCACATTGTTAAACCTGGTGTTGGTTCAGATCT

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: AT4G39850.1 (Arabidopsis thaliana), 3'ss of exon 8
gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttattatctatttctttgttgtaagagtcattcttaaact--gatttgtgatggtttattgtttgacatgttattgatgcttct------tttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                                                                                | ||| | | ||   ||| |  |  | | |    || | |   | || ||||   |  ||   ||| || | |||  |   ||       | |   | |||||| ||||| ||||| || || ||||||||||| ||  |||| ||||| |||||  || | ||||||||||||||||| || ||| |||| ||||||||
------------------------------------------------------------------------------------------------tcattttatgttatattgattaagcaataacatctagattcgaaattttgatttctgcttacctgatatatcattatttgctcaacaatatgtatcgtagGTCCTAATGGAAGTGGCAAGAGTTCCCTTTTCCGAGTATTAGGAGGTCTATGGCCCCTGGTGTCTGGACATATTGTGAAGCCAGGAGTTGGTTCTGATCT

upper sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S150_142V6.1 (Physcomitrella patens), 3'ss of exon 9
gtagctatctgagctcttttcagaattcagtggcctttctttctatttttatttattattcattgggcttgagtcagcattgaaagttgatgttatttattatctatttctttgttgtaagagtcattcttaaactgatttgtgatggtttattgtttgacatgttattgatgcttcttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                                                                   | || |  ||||  | | |||   | |      |   |  ||| | |  || |||||| |   | ||   | |      |     ||      || | | |  |||||||||||| ||||||||||||   || ||||| ||||||||||| || ||||| ||  |    || |  ||||  ||||| || || || ||||   |
--------------------------------------------------------------------------------cttaggtagtcgttaagtgt-atccgctccc-----gatggtatcaatttccaa-tgatttttcgcgtttagatttcatgtttacagctgtcatggctgt-gttacagGTCCAAATGGAAGTGGAAAAAGCAGTCTGTTCCGAGTTCTAGGTGGGCTGTGGCCCTTAGTGGAGGGGCGCATTGCAAAACCAGGCATGGGTTCTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatttgtgatggtttattgtttgacatgttattgatgcttcttttgctgaagGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCT
                                tattgat  putative branch site (score: 3)
                                        cttcttttgct  CT-rich tract
               tttattgttt  TA-rich tract