1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gcatgtgagccatctaacttttttggggtggagggaataatatgttcgtcaaattgatgtcatattacttttgctgcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAATGAGAAGAAGCAGCATGGAAATAAAAACATCCTACACTCATTCATTGG
species | Glycine max |
transcript | GLYMA11G37760.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGAAG TTTCCTTATATCACAAGCGTGAATAGTGAAEST: gi|15814848|gb|BI787123.1|BI787123
genomic: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGgcatgtgagc ... gcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAA
EST: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAG TTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAEST: gi|12691508|gb|BG157844.1|BG157844
genomic: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGgcatgtgagc ... gcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCA
EST: CAAATCCTACCCTNTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAG TTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAEST: gi|8827962|gb|BE211692.1|BE211692
genomic: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGgcatgtgagc ... gcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCA
EST: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAG TTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCA
genomic: CAAATCCTACCCTTTTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGgcatgtgagc ... gcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCA
gagggaataatatgttcgtcaaattgatgtcatattacttttgctgcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAATGAGAAGAAGCAGCATGGAAATAAAAACATCCTACACTCATTCATTGG
aattgat putative branch site (score: 4)
aataatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtgagccatctaacttttttggggtggagggaataatatgttcgtcaaattgatgtcatattacttttgctgcattggcagTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTAGGCCAATGAGAAGAAGCAGCATGGAAATAAAAACATCCTACACTCATTCATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA