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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactatacggcttgttatttactaccttcaatcatgcaatagttaataatgacttgatggtggatgcatgtatatgcagGAATGGGCGAAGCAGGATTCAACGCAGATTGCTACTGAGTTGTGTGGTTTTGTGACAATATTATCTGGGACCTTCCTCCTTCACAGAACTAAGGATATGG

Basic information

species Glycine max
transcript GLYMA11G36550.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36550.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0029g00620.t01 (Vitis vinifera), 3'ss of exon 6
------------gtgactatacggcttg------ttatttactaccttcaat-catgcaatagttaataatgacttgatggtggatgcatgtatatgcagGAATGGGCGAAGCAGGATTCAACGCAGATTGCTACTGAGTTGTGTGGTTTTGTGACAATATTATCTGGGACCTTCCTCCTTCACAGAACTAAGGATATGG
             ||| | ||  | ||       ||||||  ||  || | |   ||   |  |   |  |  | |     |   |   |  | || ||||| ||||  |  ||  ||  | | || ||||  |||||  | |||||||||||||| ||  | ||||| ||||| |||||||||| ||| ||||||||||
aactttttgattatgagtctatagtttaattaatttatttgttaatttaattgtttgttcttttctttcctttcctttccttttcttggttgaaattcagGACTGGGACACACAAAATGGATCACAAATTGTCACTGAACTCTGTGGTTTTGTGACTATTCTCTCTGGAACCTTTCTCCTTCACAAAACCAAGGATATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttcaatcatgcaatagttaataatgacttgatggtggatgcatgtatatgcagGAATGGGCGAAGCAGGATTCAACGCAGATTGCTACTGAGTTGTGTGGTTTTGTGACAATATTATCTGGGACCTTCCTCCTTCACAGAACTAAGGATATGG
             aatagttaataatga  TA-rich tract