Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcattaactgctatatatacactaccaatttacaacttcaaaaagttttagcttggctaatgaatattagagatttaaccatgctctatgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAAC

Basic information

species Glycine max
transcript GLYMA11G36010.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726414|gb|AW310768.1|AW310768
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|58020433|gb|CX707175.1|CX707175
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|213588891|gb|DB984390.1|DB984390
EST:     CTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGA-TAACGCTCGGCAAGAAACCTTGGAGCAAATGCCTCGAATACTTAC
genomic: CTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATC-TTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTAC
EST: gi|254318575|gb|GR832743.1|GR832743
EST:     TCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|58023374|gb|CX710115.1|CX710115
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|58023623|gb|CX710364.1|CX710364
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|254318574|gb|GR832742.1|GR832742
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|9902766|gb|BE611734.1|BE611734
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|21601755|gb|BQ612086.1|BQ612086
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
EST: gi|6846840|gb|AW349130.1|AW349130
EST:     TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAG                         GCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA
genomic: TGACTTCTGCAATGGAGAAGTTGGAAGATCTGGTGAGCTTTGTGAAACAGgtaatatatc ... tgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttagcttggctaatgaatattagagatttaaccatgctctatgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAAC
                             atttaac  putative branch site (score: 3)
              taatgaatattagaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatcattaactgctatatatacactaccaatttacaacttcaaaaagttttagcttggctaatgaatattagagatttaaccatgctctatgtgaaacagGCTGACCATCTTCGGCAAGAAACCTTGGAGCAAATGTCTCGAATACTTACAATCCGTCAGGCGGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCCAAC

- - - - actgcta
- - - - - - - - - - - -ctaccaa
- - - - - - - - - - - - - - - - - caacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc