1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacatgcttaccagtcctatatttatcaaactgcaaattgtatatgatttaccattttccaattttccgataacaacactattgattaaacttgcttaagATTCGTTCTGCCGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATTAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGTTCCTATA
species | Glycine max |
transcript | GLYMA11G35640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAG ATTCGTTCTGCCGC
genomic: CC-TTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAGgtttgctcta ... cttgcttaagATTCGTTCTGCCGC
gatttaccattttccaattttccgataacaacactattgattaaacttgcttaagATTCGTTCTGCCGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATTAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGTTCCTATA
tattgat putative branch site (score: 3)
cttgctt putative PPT
tattgattaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatgcttaccagtcctatatttatcaaactgcaaattgtatatgatttaccattttccaattttccgataacaacactattgattaaacttgcttaagATTCGTTCTGCCGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATTAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGTTCCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-acatgct
- - - - - ccagtcc
- - - - - - - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaca