1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttaagatttgtgacttgtattatttgaatatcatatttttctagaatgtctctttttaattgttgatctgttgtacatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG
species | Glycine max |
transcript | GLYMA11G34980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|207829987|gb|GD801903.1|GD801903
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|193469364|gb|FK437642.1|FK437642
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|58016090|gb|CX702832.1|CX702832
genomic: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|15662128|gb|BI699499.1|BI699499
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|254323157|gb|GR835765.1|GR835765
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|207684747|gb|GD664706.1|GD664706
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAEST: gi|193472484|gb|FK434869.1|FK434869
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTA
EST: AATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|58017218|gb|CX703960.1|CX703960
genomic: AATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|208073938|gb|GD867771.1|GD867771
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: CTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTACGACAAAG TGAAAACCAATGEST: gi|193662667|gb|FK603217.1|FK603217
genomic: CTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTT-CG-CA--Ggttaagattt ... acatatgtagTGAAAACCAATG
EST: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|193453916|gb|FK419545.1|FK419545
genomic: CTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|5058103|gb|AI736579.1|AI736579
genomic: TGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCANATCTTAATGTTGCTGATCTTATCAAGGCTNTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|193497576|gb|FK460808.1|FK460808
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|58017413|gb|CX704155.1|CX704155
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|58023179|gb|CX709920.1|CX709920
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|207716253|gb|GD697559.1|GD697559
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTTAATATACCTCTCGTCTCTCATTAGAEST: gi|207841941|gb|GD816317.1|GD816317
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGT-AATATACCTCTCGTCTCTCATTAGA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAGEST: gi|193371957|gb|FK334600.1|FK334600
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAEST: gi|207740941|gb|GD714319.1|GD714319
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTEST: gi|207720695|gb|GD701738.1|GD701738
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCT
EST: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAG TGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
genomic: TAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGgttaagattt ... acatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAA
atcatatttttctagaatgtctctttttaattgttgatctgttgtacatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG
tttttaattgttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagatttgtgacttgtattatttgaatatcatatttttctagaatgtctctttttaattgttgatctgttgtacatatgtagTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT